Antigen

Antigen Class

TFs and others

Antigen

HNF4A

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

age

4 year

dev stage

child

donor ID

ENCDO882MMZ

tissue

liver

sex

female

health state

healthy

sample type

tissue

lab

Michael Snyder, Stanford

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf growth protocol: https://www.encodeproject.org/documents/e22e9796-e93c-4c7e-b591-a0eb87db5a36/@@download/attachment/MyersLab_Tissue_ChIP_11_6_14.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

29651406

Reads aligned (%)

95.2

Duplicates removed (%)

16.3

Number of peaks

64971 (qval < 1E-05)

hg19

Number of total reads

29651406

Reads aligned (%)

94.7

Duplicates removed (%)

16.8

Number of peaks

64741 (qval < 1E-05)