Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MAX

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

tissue
liver
age
32 year
donor ID
ENCDO060AAA
dev stage
adult
sample type
tissue
sex
male
health state
healthy with non-obstructive CAD (coronary artery disease)
lab
Thomas Gingeras, CSHL

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf growth protocol: https://www.encodeproject.org/documents/e22e9796-e93c-4c7e-b591-a0eb87db5a36/@@download/attachment/MyersLab_Tissue_ChIP_11_6_14.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
44010907
Reads aligned (%)
95.7
Duplicates removed (%)
9.0
Number of peaks
27256 (qval < 1E-05)

hg19

Number of total reads
44010907
Reads aligned (%)
95.0
Duplicates removed (%)
10.5
Number of peaks
27008 (qval < 1E-05)

Base call quality data from DBCLS SRA