SRX2635937
GSM2534088: ChIP-seq from gastroesophageal sphincter (ENCLB162TZY); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Digestive tract
Cell type
Gastroesophageal sphincter
NA
NA

Attributes by original data submitter

Sample

dev stage
adult
sex
female
sample type
tissue
donor ID
ENCDO793LXB
age
53 year
lab
Bradley Bernstein, Broad
tissue
gastroesophageal sphincter

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26926374
Reads aligned (%)
95.0
Duplicates removed (%)
15.5
Number of peaks
26363 (qval < 1E-05)

hg19

Number of total reads
26926374
Reads aligned (%)
94.3
Duplicates removed (%)
16.3
Number of peaks
26167 (qval < 1E-05)

Base call quality data from DBCLS SRA