Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

age

4 year

dev stage

child

donor ID

ENCDO882MMZ

tissue

liver

sex

female

health state

healthy

sample type

tissue

lab

Michael Snyder, Stanford

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

growth protocol: https://www.encodeproject.org/documents/e22e9796-e93c-4c7e-b591-a0eb87db5a36/@@download/attachment/MyersLab_Tissue_ChIP_11_6_14.pdf growth protocol: https://www.encodeproject.org/documents/e22e9796-e93c-4c7e-b591-a0eb87db5a36/@@download/attachment/MyersLab_Tissue_ChIP_11_6_14.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

47881156

Reads aligned (%)

97.3

Duplicates removed (%)

5.4

Number of peaks

2026 (qval < 1E-05)

hg19

Number of total reads

47881156

Reads aligned (%)

96.6

Duplicates removed (%)

6.4

Number of peaks

1933 (qval < 1E-05)