SRX2635897
GSM2534022: ChIP-seq from KOPT-K1 (ENCLB562PRF); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
KOPT-K1
NA
NA

Attributes by original data submitter

Sample

dev stage
unknown
cell line
KOPT-K1
sex
not collected
sample type
immortalized cell line
donor ID
ENCDO568LPD
age
unknown
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/97a73f1c-6372-4dd2-b275-0b8e855cbd5a/@@download/attachment/Cell_Paper_ChIP_protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
76002358
Reads aligned (%)
93.2
Duplicates removed (%)
74.1
Number of peaks
3166 (qval < 1E-05)

hg19

Number of total reads
76002358
Reads aligned (%)
90.9
Duplicates removed (%)
78.8
Number of peaks
7226 (qval < 1E-05)

Base call quality data from DBCLS SRA