Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GABPA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

age
4 year
dev stage
child
donor ID
ENCDO882MMZ
tissue
liver
sex
female
health state
healthy
sample type
tissue
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf growth protocol: https://www.encodeproject.org/documents/e22e9796-e93c-4c7e-b591-a0eb87db5a36/@@download/attachment/MyersLab_Tissue_ChIP_11_6_14.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
36249652
Reads aligned (%)
97.3
Duplicates removed (%)
14.7
Number of peaks
4624 (qval < 1E-05)

hg19

Number of total reads
36249652
Reads aligned (%)
96.5
Duplicates removed (%)
15.8
Number of peaks
4623 (qval < 1E-05)

Base call quality data from DBCLS SRA