Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
SW 620
Primary Tissue
unresolved
Tissue Diagnosis
unresolved

Attributes by original data submitter

Sample

source_name
colon cancer cells
cell line
SW620
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were cross-linked in 1% formalin and were sonicated in SDS-lysis buffer. Chromatin was precipitated in ChIP dilution buffer using an anti-H3K27ac antibody. DNA was purified by phenol and chloroform extraction and ethanol precipitation. Libraries were prepared according to Illumina's instructions. Libraries were sequenced using Illumina HiSeq4000.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
21466023
Reads aligned (%)
98.5
Duplicates removed (%)
9.1
Number of peaks
583 (qval < 1E-05)

hg19

Number of total reads
21466023
Reads aligned (%)
97.8
Duplicates removed (%)
10.4
Number of peaks
868 (qval < 1E-05)

Base call quality data from DBCLS SRA