Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
NCI-H929
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

dev stage
adult
cell line
NCI-H929
sex
female
sample type
immortalized cell line
donor ID
ENCDO220OYR
age
62 year
health state
multiple myeloma
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
18689265
Reads aligned (%)
96.1
Duplicates removed (%)
2.3
Number of peaks
481 (qval < 1E-05)

hg19

Number of total reads
18689265
Reads aligned (%)
95.4
Duplicates removed (%)
2.5
Number of peaks
375 (qval < 1E-05)

Base call quality data from DBCLS SRA