SRX2630430
GSM2527693: ChIP-seq from B cell (ENCLB970ANP); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

dev stage
adult
cell type
B cell
sex
female
sample type
primary cell
donor ID
ENCDO115AAA
age
27 year
health state
normal
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42088302
Reads aligned (%)
96.5
Duplicates removed (%)
5.8
Number of peaks
53023 (qval < 1E-05)

hg19

Number of total reads
42088302
Reads aligned (%)
96.0
Duplicates removed (%)
6.4
Number of peaks
52798 (qval < 1E-05)

Base call quality data from DBCLS SRA