SRX2630262
GSM2527535: ChIP-seq from MCF-7 (ENCLB370SIT); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZBTB11

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

dev stage
adult
cell line
MCF-7
sex
female
sample type
immortalized cell line
donor ID
ENCDO000AAE
age
69 year
health state
breast cancer (adenocarcinoma)
passage number
6
lab
Richard Myers, HAIB

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25705763
Reads aligned (%)
89.8
Duplicates removed (%)
22.6
Number of peaks
1594 (qval < 1E-05)

hg19

Number of total reads
25705763
Reads aligned (%)
89.1
Duplicates removed (%)
24.0
Number of peaks
1750 (qval < 1E-05)

Base call quality data from DBCLS SRA