Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

dev stage
newborn
cell type
endothelial cell of umbilical vein
sex
not collected
sample type
primary cell
donor ID
ENCDO000AAS
age
unknown
health state
unknown
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/f10bdd36-e370-4777-a7f3-83091c115749/@@download/attachment/wgEncodeBroadHistone.html.pdf

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
11108592
Reads aligned (%)
20.1
Duplicates removed (%)
0.8
Number of peaks
51 (qval < 1E-05)

hg19

Number of total reads
11108592
Reads aligned (%)
19.6
Duplicates removed (%)
1.3
Number of peaks
32 (qval < 1E-05)

Base call quality data from DBCLS SRA