Antigen

Antigen Class

Histone

Antigen

H3K9ac

Cell type

Cell type Class

Blood

Cell type

SU-DHL-6

Primary Tissue

Blood

Tissue Diagnosis

Lymphoma

Sample

age

43 year

dev stage

adult

donor ID

ENCDO353AAA

sex

male

health state

large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma

sample type

immortalized cell line

cell line

SUDHL6

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction method: see document general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

30415027

Reads aligned (%)

97.4

Duplicates removed (%)

14.7

Number of peaks

24539 (qval < 1E-05)

hg19

Number of total reads

30415027

Reads aligned (%)

97.1

Duplicates removed (%)

15.4

Number of peaks

24693 (qval < 1E-05)