Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Blood

Cell type

NCI-H929

Primary Tissue

Blood

Tissue Diagnosis

Multiple Myeloma

Sample

dev stage

adult

cell line

NCI-H929

sex

female

sample type

immortalized cell line

donor ID

ENCDO220OYR

age

62 year

health state

multiple myeloma

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

48556249

Reads aligned (%)

47.2

Duplicates removed (%)

5.3

Number of peaks

27967 (qval < 1E-05)

hg19

Number of total reads

48556249

Reads aligned (%)

46.8

Duplicates removed (%)

6.5

Number of peaks

27821 (qval < 1E-05)