Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

dev stage
adult
cell line
MM.1S
sex
female
sample type
immortalized cell line
donor ID
ENCDO697GBW
age
42 year
health state
immunoglobulin A lambda myeloma
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
23994050
Reads aligned (%)
94.5
Duplicates removed (%)
2.2
Number of peaks
10675 (qval < 1E-05)

hg19

Number of total reads
23994050
Reads aligned (%)
93.6
Duplicates removed (%)
3.0
Number of peaks
10454 (qval < 1E-05)

Base call quality data from DBCLS SRA