Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

dev stage
adult
cell line
K562
sex
female
sample type
immortalized cell line
donor ID
ENCDO000AAD
age
53 year
health state
chronic myelogenous leukemia (CML)
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/f10bdd36-e370-4777-a7f3-83091c115749/@@download/attachment/wgEncodeBroadHistone.html.pdf

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
27579809
Reads aligned (%)
78.5
Duplicates removed (%)
3.8
Number of peaks
595 (qval < 1E-05)

hg19

Number of total reads
27579809
Reads aligned (%)
77.8
Duplicates removed (%)
4.8
Number of peaks
828 (qval < 1E-05)

Base call quality data from DBCLS SRA