Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
Neutrophils
MeSH Description
Immature neutrophils.

Attributes by original data submitter

Sample

dev stage
unknown
cell type
neutrophil
sex
not collected
sample type
primary cell
donor ID
ENCDO055UKA
age
unknown
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
64552034
Reads aligned (%)
98.0
Duplicates removed (%)
11.3
Number of peaks
13558 (qval < 1E-05)

hg19

Number of total reads
64552034
Reads aligned (%)
97.4
Duplicates removed (%)
12.3
Number of peaks
13348 (qval < 1E-05)

Base call quality data from DBCLS SRA