SRX262850
GSM1118372: input in asynchronous; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
F9
Tissue
Testis
Disease
Embryonal Carcinoma; Testicular Teratoma

Attributes by original data submitter

Sample

source_name
F9_RBPJ_input
cell line
F9
cell type
murine embryonic carcinoma cells; testicular teratoma
cell cycle stage
cycling cells (containing 95% interphase and 5% mitosis cells)
sample type
input control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
55271050
Reads aligned (%)
98.0
Duplicates removed (%)
56.6
Number of peaks
471 (qval < 1E-05)

mm9

Number of total reads
55271050
Reads aligned (%)
97.8
Duplicates removed (%)
56.6
Number of peaks
506 (qval < 1E-05)

Base call quality data from DBCLS SRA