Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
NIH/3T3
Primary Tissue
Embryo
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
NIH3T3_Control_combined
cell line
NIH3T3 fibroblasts
genotype
normal
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
65701485
Reads aligned (%)
32.8
Duplicates removed (%)
57.5
Number of peaks
1536 (qval < 1E-05)

mm9

Number of total reads
65701485
Reads aligned (%)
32.6
Duplicates removed (%)
57.6
Number of peaks
1656 (qval < 1E-05)

Base call quality data from DBCLS SRA