Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 cells
cell type
breast cancer cell line
cell line
MCF7 cells
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
treatment
Cycloheximide (10 µM)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
26453290
Reads aligned (%)
56.4
Duplicates removed (%)
37.9
Number of peaks
790 (qval < 1E-05)

hg38

Number of total reads
26453290
Reads aligned (%)
58.2
Duplicates removed (%)
36.6
Number of peaks
400 (qval < 1E-05)

Base call quality data from DBCLS SRA