SRX262134
GSM1116654: MCF7 DMSO HSF1 R2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 cells
cell type
breast cancer cell line
cell line
MCF7 cells
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
21493266
Reads aligned (%)
93.5
Duplicates removed (%)
82.6
Number of peaks
273 (qval < 1E-05)

hg38

Number of total reads
21493266
Reads aligned (%)
94.4
Duplicates removed (%)
80.9
Number of peaks
232 (qval < 1E-05)

Base call quality data from DBCLS SRA