Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Lung
Cell type
HNE-1
NA
NA

Attributes by original data submitter

Sample

source_name
Nasopharyngeal Carcinoma cell line
cell line
HNE1
antibody
H3K4Me1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
22315023
Reads aligned (%)
98.7
Duplicates removed (%)
14.1
Number of peaks
15355 (qval < 1E-05)

hg19

Number of total reads
22315023
Reads aligned (%)
98.4
Duplicates removed (%)
14.3
Number of peaks
15420 (qval < 1E-05)

Base call quality data from DBCLS SRA