SRX2614877
GSM2523135: HK1 Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
NPC/HK1
NA
NA

Attributes by original data submitter

Sample

source_name
Nasopharyngeal Carcinoma cell line
cell line
HK1
antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29649565
Reads aligned (%)
98.1
Duplicates removed (%)
13.9
Number of peaks
1006 (qval < 1E-05)

hg19

Number of total reads
29649565
Reads aligned (%)
97.2
Duplicates removed (%)
15.5
Number of peaks
1186 (qval < 1E-05)

Base call quality data from DBCLS SRA