SRX2614875
GSM2523133: HK1 H3K4Me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
NPC/HK1
NA
NA

Attributes by original data submitter

Sample

source_name
Nasopharyngeal Carcinoma cell line
cell line
HK1
antibody
H3K4Me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22072929
Reads aligned (%)
98.3
Duplicates removed (%)
17.5
Number of peaks
25359 (qval < 1E-05)

hg19

Number of total reads
22072929
Reads aligned (%)
97.4
Duplicates removed (%)
18.9
Number of peaks
25578 (qval < 1E-05)

Base call quality data from DBCLS SRA