SRX2614871
GSM2523129: C666-1 ATAC; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
C666-1
NA
NA

Attributes by original data submitter

Sample

source_name
Nasopharyngeal Carcinoma cell line
cell line
C666-1
antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
127793544
Reads aligned (%)
91.8
Duplicates removed (%)
81.8
Number of peaks
32462 (qval < 1E-05)

hg19

Number of total reads
127793544
Reads aligned (%)
91.6
Duplicates removed (%)
81.9
Number of peaks
32343 (qval < 1E-05)

Base call quality data from DBCLS SRA