Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Others
Cell type
C666-1
NA
NA

Attributes by original data submitter

Sample

source_name
Nasopharyngeal Carcinoma cell line
cell line
C666-1
antibody
H3K4Me1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
22129287
Reads aligned (%)
99.1
Duplicates removed (%)
16.3
Number of peaks
33622 (qval < 1E-05)

hg19

Number of total reads
22129287
Reads aligned (%)
98.8
Duplicates removed (%)
16.8
Number of peaks
33465 (qval < 1E-05)

Base call quality data from DBCLS SRA