Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Others
Cell type
C666-1
NA
NA

Attributes by original data submitter

Sample

source_name
Nasopharyngeal Carcinoma cell line
cell line
C666-1
antibody
H3K4Me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
23334962
Reads aligned (%)
97.0
Duplicates removed (%)
32.1
Number of peaks
23339 (qval < 1E-05)

hg19

Number of total reads
23334962
Reads aligned (%)
96.8
Duplicates removed (%)
32.3
Number of peaks
23314 (qval < 1E-05)

Base call quality data from DBCLS SRA