SRX261277
GSM1115994: H3K4me1 ChIPSeq E2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7
cell line
MCF7
chip antibody
H3K4me1
chip vendor/catalog
Abcam, ab8899
treatment
1hr treatment with 100nM E2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24039198
Reads aligned (%)
45.6
Duplicates removed (%)
1.0
Number of peaks
934 (qval < 1E-05)

hg19

Number of total reads
24039198
Reads aligned (%)
45.3
Duplicates removed (%)
1.6
Number of peaks
1008 (qval < 1E-05)

Base call quality data from DBCLS SRA