Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7
cell line
MCF7
chip antibody
ERa
chip vendor/catalog
Santa Cruz Biotech, SC-543
treatment
1hr treatment with 100nM E2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
119841250
Reads aligned (%)
34.2
Duplicates removed (%)
49.5
Number of peaks
20537 (qval < 1E-05)

hg38

Number of total reads
119841250
Reads aligned (%)
35.4
Duplicates removed (%)
48.4
Number of peaks
21151 (qval < 1E-05)

Base call quality data from DBCLS SRA