SRX2598524
GSM2514484: IgG; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
IgG control ChIP in wild-type HeLa cells
cell line
HeLa

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Formaldehye-crosslinked chromatin was sheared by sonication to an average size of ~300bp and then immunoprecipitated NEBNext ChIP-seq Library Prep Kit (NEB)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
57330556
Reads aligned (%)
98.9
Duplicates removed (%)
5.5
Number of peaks
1680 (qval < 1E-05)

hg19

Number of total reads
57330556
Reads aligned (%)
98.3
Duplicates removed (%)
6.7
Number of peaks
1542 (qval < 1E-05)

Base call quality data from DBCLS SRA