SRX259618
GSM1113434: Kasumi AP4 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP4

Cell type

Cell type Class
Blood
Cell type
Kasumi-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
Kasumi-1 cell culture
cell line
AML-patient-derived cell lines t(8;21) Kasumi-1
chip antibody
anti-AP4 [Takeshi Egawa]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
129375000
Reads aligned (%)
16.3
Duplicates removed (%)
83.3
Number of peaks
14702 (qval < 1E-05)

hg38

Number of total reads
129375000
Reads aligned (%)
17.9
Duplicates removed (%)
81.8
Number of peaks
15595 (qval < 1E-05)

Base call quality data from DBCLS SRA