SRX259612
GSM1113428: Kasumi RUNX1 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
Kasumi-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
Kasumi-1 cell culture
cell line
AML-patient-derived cell lines t(8;21) Kasumi-1
chip antibody
anti-RUNX1 (c-terminus) [Yoram Groner lab, Weizmann Institute]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
48342816
Reads aligned (%)
19.2
Duplicates removed (%)
72.2
Number of peaks
14695 (qval < 1E-05)

hg38

Number of total reads
48342816
Reads aligned (%)
20.8
Duplicates removed (%)
70.3
Number of peaks
14900 (qval < 1E-05)

Base call quality data from DBCLS SRA