Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
brm

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
Endogenous BRM IP
cell line
S2 cells
chip antibody
Monoclonal against Drosophila BRM (non-commercial)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Immunoprecipitated DNA was isolated with the ChIP cleanup and concentrator Kit (Zymo Research) Input DNA and immunoprecipitated DNA samples were used for Rubicon Thruplex-FD library preparation and sequenced in a Illumina HiSeq2500 instrument

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm3

Number of total reads
21888039
Reads aligned (%)
72.6
Duplicates removed (%)
23.6
Number of peaks
4122 (qval < 1E-05)

dm6

Number of total reads
21888039
Reads aligned (%)
70.8
Duplicates removed (%)
25.2
Number of peaks
2344 (qval < 1E-05)

Base call quality data from DBCLS SRA