Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Liver
Cell type
AML12
Tissue
Liver
Cell Type
Hepatocyte
Disease
Normal

Attributes by original data submitter

Sample

source_name
AML12
tissue
AML12 cells
chip antibody
CTCF

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP experiments were performed with 1X10e7 AML12 cells as previously described (Wen et al., 2008). ChIP DNA libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina MiSeq

mm10

Number of total reads
30304311
Reads aligned (%)
95.2
Duplicates removed (%)
19.1
Number of peaks
52385 (qval < 1E-05)

mm9

Number of total reads
30304311
Reads aligned (%)
94.8
Duplicates removed (%)
19.0
Number of peaks
52305 (qval < 1E-05)

Base call quality data from DBCLS SRA