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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Ctcf
wikigenes
PDBj
CellType: AML12
ATCC
MeSH
RIKEN BRC
SRX2578762
GSM2496433: shCtrl CTCF ChIPSeq rep2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Ctcf
Cell type
Cell type Class
Liver
Cell type
AML12
Tissue
Liver
Cell Type
Hepatocyte
Disease
Normal
Attributes by original data submitter
Sample
source_name
AML12
tissue
AML12 cells
chip antibody
CTCF
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP experiments were performed with 1X10e7 AML12 cells as previously described (Wen et al., 2008). ChIP DNA libraries were prepared for sequencing using standard Illumina protocols.
Sequencing Platform
instrument_model
Illumina MiSeq
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
37053566
Reads aligned (%)
98.1
Duplicates removed (%)
27.0
Number of peaks
55019 (qval < 1E-05)
mm9
Number of total reads
37053566
Reads aligned (%)
97.6
Duplicates removed (%)
26.9
Number of peaks
55016 (qval < 1E-05)
Base call quality data from
DBCLS SRA