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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: hcp-6
wikigenes
PDBj
CellType: Embryos
ATCC
MeSH
RIKEN BRC
SRX257668
GSM1111788: HCP6 Rep4 ChIPSeq; Caenorhabditis elegans; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
hcp-6
Cell type
Cell type Class
Embryo
Cell type
Embryos
NA
NA
Attributes by original data submitter
Sample
source_name
whole worms
strain
N2
developmental stage
embryo
matching input
Input_N2_MxEmb_Rep8
antibody
HCP-6 KH-HCP6 Rabbit Polyclonal to 1708-1722 aa sequence CKSAQAYHLHNIFEEDEES (PMID:19119011)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
20216847
Reads aligned (%)
94.8
Duplicates removed (%)
80.2
Number of peaks
1252 (qval < 1E-05)
ce10
Number of total reads
20216847
Reads aligned (%)
94.8
Duplicates removed (%)
80.2
Number of peaks
1249 (qval < 1E-05)
Base call quality data from
DBCLS SRA