SRX257667
GSM1111787: HCP6 Rep3 ChIPSeq; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
hcp-6

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
whole worms
strain
N2
developmental stage
embryo
matching input
Input_N2_MxEmb_Rep16
antibody
HCP-6 KH-HCP6 Rabbit Polyclonal to 1708-1722 aa sequence CKSAQAYHLHNIFEEDEES (PMID:19119011)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

ce10

Number of total reads
21688641
Reads aligned (%)
92.6
Duplicates removed (%)
60.1
Number of peaks
1401 (qval < 1E-05)

ce11

Number of total reads
21688641
Reads aligned (%)
92.6
Duplicates removed (%)
60.1
Number of peaks
1395 (qval < 1E-05)

Base call quality data from DBCLS SRA