SRX257657
GSM1111777: DPY27 Rep1 ChIPSeq; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
dpy-27

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
whole worms
strain
N2
developmental stage
embryo
matching input
Input_N2_MxEmb_Rep1
antibody
DPY-27 JL00001 Rabbit polyclonal to 1-409 aa. (Ercan et al. Nat Genet. 2007) is against the antigen 1-409 aa

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

ce10

Number of total reads
30487356
Reads aligned (%)
90.3
Duplicates removed (%)
80.1
Number of peaks
2060 (qval < 1E-05)

ce11

Number of total reads
30487356
Reads aligned (%)
90.3
Duplicates removed (%)
80.1
Number of peaks
2073 (qval < 1E-05)

Base call quality data from DBCLS SRA