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Install and launch IGV before selecting data to visualize
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: dpy-26
wikigenes
PDBj
CellType: Embryos
ATCC
MeSH
RIKEN BRC
SRX257656
GSM1111776: DPY26 TY1072 Rep2 ChIPSeq; Caenorhabditis elegans; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
dpy-26
Cell type
Cell type Class
Embryo
Cell type
Embryos
NA
NA
Attributes by original data submitter
Sample
source_name
whole worms
strain
TY1072
developmental stage
embryo
matching input
Input_TY1072_MxEmb_Rep18
antibody
DPY-26 JL00003 Rabbit polyclonal to 40-1262 aa. (PMID:19853451) is against the antigen 40-1262 aa
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
ce10
Number of total reads
13761013
Reads aligned (%)
86.8
Duplicates removed (%)
8.4
Number of peaks
679 (qval < 1E-05)
ce11
Number of total reads
13761013
Reads aligned (%)
86.8
Duplicates removed (%)
8.4
Number of peaks
679 (qval < 1E-05)
Base call quality data from
DBCLS SRA