Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

source_name
NFkappaB ChIP-seq, EtOH
cell type
LCL
chip antibody
anti-NFkB p65
vendor
Santa Cruz Biotechnology, Inc.
treatment
EtOH

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
11054640
Reads aligned (%)
49.1
Duplicates removed (%)
8.0
Number of peaks
1066 (qval < 1E-05)

hg38

Number of total reads
11054640
Reads aligned (%)
50.5
Duplicates removed (%)
7.1
Number of peaks
782 (qval < 1E-05)

Base call quality data from DBCLS SRA