SRX256998
GSM1111179: NFkappaB ChIP-seq, EtOH [EN19138]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

GEO Accession
GSM1111179
cell type
LCL
chip antibody
NFkappaB

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
30153605
Reads aligned (%)
53.4
Duplicates removed (%)
22.4
Number of peaks
1640 (qval < 1E-05)

hg38

Number of total reads
30153605
Reads aligned (%)
55.1
Duplicates removed (%)
21.0
Number of peaks
1277 (qval < 1E-05)

Base call quality data from DBCLS SRA