SRX255044
GSM1105685: Background ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
HuRef
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1105685
cell line
HuRef
cell type
Lymphoblast
chip antibody
Normal Mouse IgG; Upstate (cat#12-371)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39496123
Reads aligned (%)
98.3
Duplicates removed (%)
13.6
Number of peaks
490 (qval < 1E-05)

hg19

Number of total reads
39496123
Reads aligned (%)
97.2
Duplicates removed (%)
15.2
Number of peaks
734 (qval < 1E-05)

Base call quality data from DBCLS SRA