Curated Sample Data


Genome
dm3
Antigen Class
Histone
Antigen
H3K9me2
Cell type Class
Embryo
Cell type
4-8h embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
embryos
Stage
4-8hr embryo
chip antibody
H3K9me2

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Embryos were collected on standard apple juice plate. Before collection, pre-collection for 1hr was performed. Embryos were then collected for 4 hours and aged for 4 hours in 25C. ChIP was performed following standrad modEncode protocol. Library was prepared using NuGen Ovation Ultralow Library Systems V2

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
15539375
Reads aligned (%)
93.3
Duplicates removed (%)
2.5
Number of peaks
9499 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA