SRX254821
GSM1104471: Day4 Suz12 4OHT Input Rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA

Attributes by original data submitter

Sample

source_name
Differentiated embryonic stem cells
cell line
Brg1f/f; Actin-CreER
timepoint
Day 4
antibody
none
brg1 levels
Deleted

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29263184
Reads aligned (%)
94.9
Duplicates removed (%)
13.9
Number of peaks
426 (qval < 1E-05)

mm9

Number of total reads
29263184
Reads aligned (%)
94.5
Duplicates removed (%)
13.8
Number of peaks
547 (qval < 1E-05)

Base call quality data from DBCLS SRA