SRX254626
GSM1104365: pachynema.input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
pachynema cells
cell type
pachynema cells
antibody
none (input)
antibody information
NA
internal reference
120504B_lane8_VLB1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
34664513
Reads aligned (%)
97.8
Duplicates removed (%)
20.8
Number of peaks
534 (qval < 1E-05)

mm9

Number of total reads
34664513
Reads aligned (%)
97.5
Duplicates removed (%)
20.8
Number of peaks
590 (qval < 1E-05)

Base call quality data from DBCLS SRA