SRX254622
GSM1104361: HeLaS3.S.IgG; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa S3
cell type
HeLa S3
cell cycle phase
S
antibody
IgG control
antibody information
Jackson# 011-000-003
internal reference
130104_lane4_VLB5

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25117394
Reads aligned (%)
98.5
Duplicates removed (%)
6.7
Number of peaks
930 (qval < 1E-05)

hg19

Number of total reads
25117394
Reads aligned (%)
97.5
Duplicates removed (%)
8.1
Number of peaks
988 (qval < 1E-05)

Base call quality data from DBCLS SRA