ChIP-Atlas: SRX254620

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: TFs and others
Antigen: RCOR1

Cell type

Cell type Class: Uterus
Cell type: HeLa
Primary Tissue: Cervix
Tissue Diagnosis: Adenocarcinoma

Attributes by original data submitter

Sample

source_name: HeLa S3
cell type: HeLa S3
cell cycle phase: G1
antibody: CoREST
antibody information: Bethyl A300-130A (LOT#A300-130A-1)
internal reference: 130104_lane5_VLB4

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 18953568
Reads aligned (%): 97.5
Duplicates removed (%): 7.5
Number of peaks: 738 (qval < 1E-05)

hg19

Number of total reads: 18953568
Reads aligned (%): 96.5
Duplicates removed (%): 8.7
Number of peaks: 825 (qval < 1E-05)

Base call quality data from DBCLS SRA