SRX2541752
Gro ChIP-seq 1.5 - 4 hr

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

strain
Oregon R
age
1.5 - 4 hour
sex
pooled male and female
tissue
embryo
genotype
wild-type
sample_type
whole organism
replicate
rep1
assay
anti-Gro ChIP-seq

Sequenced DNA Library

library_name
gro_chip_1.5_4_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
22276144
Reads aligned (%)
51.0
Duplicates removed (%)
17.0
Number of peaks
2412 (qval < 1E-05)

dm3

Number of total reads
22276144
Reads aligned (%)
51.8
Duplicates removed (%)
13.9
Number of peaks
2490 (qval < 1E-05)

Base call quality data from DBCLS SRA