SRX2541751
Gro ChIP-seq 1.5 - 4 hr

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

strain
Oregon R
age
1.5 - 4 hour
sex
pooled male and female
tissue
embryo
genotype
wild-type
sample_type
whole organism
replicate
rep2
assay
anti-Gro ChIP-seq

Sequenced DNA Library

library_name
gro_chip_1.5_4_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
23743733
Reads aligned (%)
35.6
Duplicates removed (%)
14.1
Number of peaks
2403 (qval < 1E-05)

dm3

Number of total reads
23743733
Reads aligned (%)
36.4
Duplicates removed (%)
11.2
Number of peaks
1931 (qval < 1E-05)

Base call quality data from DBCLS SRA