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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Embryos
ATCC
MeSH
RIKEN BRC
SRX2541747
Gro ChIP-seq 6.5 - 9 hr
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Embryo
Cell type
Embryos
NA
NA
Attributes by original data submitter
Sample
strain
Oregon R
age
6.5 - 9 hour
sex
pooled male and female
tissue
embryo
genotype
wild-type
sample_type
whole organism
replicate
rep2
assay
anti-Gro ChIP-seq
Sequenced DNA Library
library_name
gro_chip_6.5_9_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
22367998
Reads aligned (%)
52.1
Duplicates removed (%)
15.7
Number of peaks
2811 (qval < 1E-05)
dm3
Number of total reads
22367998
Reads aligned (%)
53.0
Duplicates removed (%)
12.4
Number of peaks
2684 (qval < 1E-05)
Base call quality data from
DBCLS SRA