SRX253213
GSM1103556: DAOY INPUT ChIPseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Daoy
Primary Tissue
Brain: Cerebellum
Tissue Diagnosis
Medulloblastoma

Attributes by original data submitter

Sample

source_name
DAOY cells
cell type
medulloblastoma cell line
cell line
DAOY
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24575243
Reads aligned (%)
98.5
Duplicates removed (%)
1.3
Number of peaks
843 (qval < 1E-05)

hg19

Number of total reads
24575243
Reads aligned (%)
97.6
Duplicates removed (%)
2.4
Number of peaks
728 (qval < 1E-05)

Base call quality data from DBCLS SRA